Insect 12S rRNA secondary structure

These files are used in the analysis of insect 12S rRNA secondary structure published in Page, R. D. M. (2000). Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching. Nucleic Acids Research 28: 3839-3845. [reprint]

Alignments

225 insect mitochondrial 12S rRNA sequences (domain III).

NEXUS format with taxonomic groups and sources indicated

ClustalW format

FASTA format

16 insect mitochondrial 12S rRNA sequences (domain III).

DCSE format with secondary structure indicated

Skeleton files

This file can be used by the program RnaViz to speed up drawing secondary structures.

Skeleton for domain III

Insect 12S rRNA secondary structure prediction

This experimental server takes a domain III 12S rRNA sequence and returns a suggested structure.

Related topics

	Software to view RNA secondary structures
	DCSE (Dedicated Sequence Alignment Editor)
	Robin Gutell's Comparative RNA Web Site
	SSU rRNA database
	RNA structure logos

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