Some papers and manuscripts are available to download as Adode Acrobat PDF files. To view these you need Adobe Acrobat, which is available for Macs, PCs, and Unix. With version 3.0 you can view PDF files from within your Web browser.
Some papers and manuscripts are available to download as Adode Acrobat PDF files.
To view these you need Adobe Acrobat, which is available for Macs, PCs, and
Unix. With version 3.0 you can view PDF files from within your Web browser.
Publications
Reports
Technical Reports
Roderic
Page and Gabriel Valiente (submitted) An Edit Script for Taxonomic
Classifications. WABI 2005.[Software]
Page,
RDM (2005). A Taxonomic Search Engine: Federating taxonomic databases using
web services, BMC Bioinformatics 2005, 6:48 doi:10.1186/1471-2105-6-48
[Project web site]
Cotton,
JA and Page, RDM, Rates and patterns of gene duplication and loss in the human
genome, Proc Roy Soc 272:277 - 283 [doi:10.1098/rspb.2004.2969]
Charles
Semple, Philip Daniel, Wim Hordijk, Roderic D. M. Page, and
Mike Steel (2004) Supertree Algorithms for Ancestral Divergence Dates and Nested
Taxa. Bioinformatics 20:2355-60[Supertree
server][PubMed]
Roderic
D. M. Page: Phyloinformatics: Towards a Phylogenetic Database",
in "Data Mining in Bioinformatics" (edited by Jason Wang, et al.).Pages
219-241[Book
web site]
Roderic
D. M. Page, (2004) "Taxonomy, supertrees, and the Tree of Life",
in "Phylogenetic Supertrees: Combining information to reveal the tree of
life" (edited by Olaf Bininda-Emonds), pages 247-265.[Project
web site][Book
web site]
Roderic
D. M. Page Towards a Taxonomically Intelligent Phylogenetic Database.
Technical Reports in Taxonomy 04-01 (paper to be given at DBiBD
at Edinburgh, january 8-9 2005 [PDF]
Vincent S. Smith, Roderic D. M. Page, Kevin P. Johnson (2004). Data incongruence and the problem of avian louse phylogeny. Zoologica Scripta, 33 , 239 -259. [doi:10.1111/j.0300-3256.2004.00149.x ]
Percy,
D.M., Page, R. D. M., and Cronk, Q. C. B. (2004). Plant–Insect
Interactions: Double-Dating Associated Insect and Plant Lineages Reveals Asynchronous
Radiations. Systematic Biology 53:120-127. [doi:10.1080/10635150490264996]
[OpenURL]
Roderic
D. M. Page, Robert H. Cruickshank, Megan Dickens, Robert W. Furness,
Martyn Kennedy, Ricardo L. Palma, and Vincent S. Smith (2004). Phylogeny of
“Philoceanus-complex” seabird lice (Phthiraptera: Ischnocera)
inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution.[data]
[doi:10.1016/S1055-7903(03)00227-6]
Cotton,
J. A. and R D M. Page. Gene tree parsimony vs. uninode coding
for phylogenetic reconstruction. Molecular Phylogenetics and Evolution,
29:298-308 [doi:10.1016/S1055-7903(03)00109-X]
Kevin
P. Johnson, Robert H. Cruickshank, Richard J. Adams, Vincent S. Smith, Roderic
D. M. Page and Dale H. Clayton. 2003. Dramatically elevated rate of mitochondrial
substitution in lice (Insecta: Phthiraptera), Molecular Phylogenetics and
Evolution, 26: 231-24 [doi:10.1016/S1055-7903(02)00342-1]
Kevin
P. Johnson, Richard J. Adams, Roderic D. M. Page, Dale H. Clayton. 2003.
When Do Parasites Fail to Speciate in Response to Host Speciation? Systematic
Biology, 52:37-47.[doi:10.1080/10635150390132704]
Gary Benson and Roderic Page (eds) Algorithms in Bioinformatics, Third
International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003,
Proceedings Lecture Notes in Bioinformatics, Vol. 2812. Available
online in SpringerLink
Page,
R. D. M. and M. A. Charleston. 2002. TreeMap versus BPA (again): A response
to Dowling. Technical
Reports in Taxonomy 02-02.
Page, R. D. M. (ed). Tangled trees: phylogeny, cospeciation and coevolution. University of Chicago Press.[Symposium web site] [Data, software, and erata]
Page,
R.D.M. Modified mincut supertrees. Pp. 537-551 in R. Guigó and D.
Gusfield (eds), WABI
2002, LNCS 2452. [PDF].
Cotton,
J. A., and R. D. M. Page. 2002. Going nuclear: gene family evolution
and vertebrate phylogeny reconciled. Proceedings of the Royal Society of
London 269:1555–1561.[data]
Page,
R. D. M., R. Cruickshank, and K. P. Johnson. 2002. Louse mitochondrial 12S
rRNA secondary structure is highly variable. Insect Molecular Biology
11:361-369.[Medline
record][data]
Kennedy,
M. & Page, R.D.M. (2002). Seabird supertrees: Combining partial estimates
of procellariiform phylogeny. The Auk, 119: 88-108.
Page,
R.D.M. and J Cotton (2002). Vertebrate phylogenomics: reconciled trees and
gene duplications.Pages 536-547 in Pacific Symposium on Biocomputing
2002.[Medline
record] PSB 2002.
Cruickshank,
R. H., Johnson, K. P., Smith, V. S., Adams, R. J., Clayton, D. H. and Page,
R. D. M. (2001). Phylogenetic analysis of partial sequences of elongation
factor 1 alpha identifies major groups of lice (Insecta: Phthiraptera). Molecular
Phylogenetics and Evolution 19, 202-215. [Medline
record] [Popset]
[TreeBASE study S570]
Page, R. D. M. (2000). Circles: automating the comparative analysis of
RNA secondary structure. Bioinformatics 16: 1042-1043.[Software][Medline
record]
Page, R. D. M. (2000). Comparative analysis of secondary structure of
insect mitochondrial small subunit ribosomal RNA using maximum weighted matching.
Nucleic Acids Research 28: 3839-3845.[MEDLINE
record][Data]
(Reproduced with permission from NAR
Online).
Page, R.D.M. and Cotton, J.C. (2000) GeneTree: a tool for exploring gene family evolution. In D. Sankoff, and J. Nadeau, (eds.), Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment, and the Evolution of Gene Families. Kluwer Academic Publishers, Dordrecht, pp. 525-536.[Software]
Thorley, J. L., and R. D. M. Page (2000). RadCon:
phylogenetic tree comparison and consensus. Bioinformatics 16:
486-487.[Software]
[Medline
record]
Morand, S., M. S. Hafner, R. D. M. Page, and D. L. Reed (2000). Comparative body size relationships in pocket gophers and their chewing lice.
Biological Journal of the Linnean Society 70: 239-249
Page,
R. D. M. (2000). Extracting species trees from complex gene trees: reconciled
trees and vertebrate phylogeny. Molecular Phylogenetics and Evolution,
14:89-106. [MEDLINE
record] [Data sets]
Slowinksi,
J. and R. D. M. Page (1999). How should species phylogenies be inferred
from sequence data? Systematic Biology 48: 814-825.
Page,
R. D. M. and M. A. Charleston (1999). Comments on Allard and Carpenter (1996),
or the "aquatic ape" hypothesis revisited. Cladistics 15: 73-74.
[Data sets]
Charleston, M. A. and R. D. M. Page (1999). Spectral analysis -- a brief introduction. In: Molecular systematics and plant evolution. P. M. Hollingsworth, R. M. Bateman and R. J. Gornall. London, Taylor & Francis: pp 255-267.
Page, R. D. M. (1998). GeneTree:
comparing gene and species phylogenies using reconciled trees. Bioinformatics,
14:819-820. [MEDLINE
record] [Software]
Page, R. D. M. and Charleston, M. A. (1998).
Trees within trees: Phylogeny and historical associations. Trends in Ecolology and
Evolution, 13:356-359.
Page, R. D. M., Lee, P. L. M., Becher, S. A., Griffiths, R. and Clayton,
D. H. (1998). A different tempo of mitochondrial DNA evolution in birds and
their parasitic lice. Molecular Phylogenetics and Evolution,9,
276-293 [MEDLINE
record]
Charleston,
M. A. (1998). Jungles: a new solution to the host/parasite phylogeny reconciliation
problem. Mathematical Biosciences, 149, 191-223.
Page, R. D. M. and Charleston, M. A. (1997).
Reconciled trees and incongruent gene and species trees.
In: B. Mirkin, F. R. McMorris, F. S. Roberts and A. Rzhetsky (eds),
Mathematical hierarchies in biology , Vol. 37, American Mathematical Society.
Page, R. D. M. and Charleston, M. A. (1997). From gene to organismal
phylogeny: Reconciled trees and the gene tree/species tree problem. Molecular
Phylogenetics and Evolution, 7, 231-240. [MEDLINE
record]
Clayton, D.H., Price, R.D., & Page, R.D.M. (1996) Revision of Dennyus (Collodennyus) lice (Phithiraptera: Menoponidae) from swiftlets, with descriptions of new taxa and a comparison of louse and host relationships. Systematic Entomology, 21, 179-204.
Page, R.D.M. (1996) On consensus, confidence, and "total" evidence.
Cladistics, 12, 83-92.
Page, R.D.M. (1996) TreeView:
An application to display phylogenetic trees on personal computers. Computer
Applications in the Biological Sciences, 12, 357-358. [MEDLINE
record]
Lee,
P.L.M., Clayton, D.H., Griffiths, R., & Page, R.D.M. (1996) Does
behaviour reflect phylogeny in swiftlets (Aves: Apodidae)? A test using cytochrome
b mitochondrial DNA sequences. Proceedings of the National Academy
of Science, USA, 93, 7091-7096. [MEDLINE
record](Abstract)(Popular
article in Daily Telegraph)
Page, R.D.M. (1996) Temporal congruence revisited:
comparison of mitochondrial DNA sequence divergence in cospeciating
pocket gophers and their chewing lice. Systematic Biology,
45, 151-167. (Abstract)
Page, R.D.M., Clayton, D.H., & Paterson, A.M. (1996) Lice and cospeciation:
A response to Barker. International Journal for Parasitology,
26, 213-218. [Medline
record]
Page, R.D.M., & Hafner, M.S. 1996. Molecular phylogenies and host-parasite cospeciation.: gophers and lice as a model system. Pages 255-270 in New uses for new phylogenies (Harvey, P.H., Leigh Brown, A.J., Maynard Smith, J., & Nee, S., eds.). Oxford University Press, Oxford.
Hafner, M. S. and R.D.M. Page (1995). Molecular phylogenies and host-parasite cospeciation: gophers and lice as a model system. Philos Trans R Soc Lond B Biol Sci 349(1327):77-83 [Medline record]
Mooers, A.O., Page, R.D.M., Purvis, A., & Harvey, P.H. (1995) Phylogenetic noise leads to unbalanced cladistic tree reconstructions. Systematic Biology, 44, 332-342. (Abstract)
Page, R.D.M. (1995) Parallel phylogenies: reconstructing the history
of host-parasite assemblages. Cladistics, 10, 155-173.
Page, R.D.M., Price, R.D.P., & Hellenthal, R.A. (1995) Phylogeny
of Geomydoecus and Thomomydoecus pocket gopher lice (Phthiraptera:
Trichodectidae) inferred from cladistic analysis of adult and first instar morphology.
Systematic Entomology, 20, 129-143. (Tree
and data)
Page, R.D.M. (1994) Maps between trees and cladistic
analysis of historical associations among genes, organisms, and
areas. Systematic Biology, 43, 58-77.
Page, R.D.M., & Lydeard, C. (1994) Towards a cladistic biogeography
of the Caribbean. Cladistics, 10, 21-41.
Page, R.D.M. 1993. COMPONENT: Tree comparison software for Microsoft Windows, version 2.0. The Natural History Museum, London.
Page, R.D.M. (1993) Genes, organisms, and areas: the problem of multiple lineages. Systematic Biology, 42, 77-84.
Page,
R.D.M. (1993) On describing the shape of rooted and unrooted trees. Cladistics,
9, 93-99.
Page, R.D.M. (1993) Parasites, phylogeny and cospeciation. International
Journal of Parasitology 23: 499-506.
Page, R.D.M. (1993) On islands of trees and the efficacy of different methods of branch swapping in finding most-parsimonious trees. Systematic Biology, 42, 200-210.
Final
report on NERC grant GR3/11075 “Cospeciation and relative rates of evolution
in lice and birds: a molecular approach” Roderic D. M. Page, R. Griffiths,
and R. W. Furness
Report
on NERC Grant GR3/1A095 “Molecular phylogenies and host-parasite cospeciation”
